CDI Microbiome Modeling

This is the data file repository for the manuscript, “Modeling healthy, diarrheal, and Clostridium difficile infection status using clinical data and microbiome-based biomarkers” by Alyxandria M. Schubert and colleagues, which was published in mBio.

• MIMARKS Spreadsheet contains metadata for all samples included in study
• Hospital-acquired (cases and diarrheal controls) cohort part 1: sff oligos
• Hospital-acquired (cases and diarrheal controls) cohort part 2: sff oligos
• Hospital-acquired (cases and diarrheal controls) cohort part 3: sff oligos
• Community-acquired (non-diarrheal controls) cohort part 1: sff oligos
• Community-acquired (non-diarrheal controls) cohort part 2: sff oligos