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Difference between revisions of "Get.metacommunity"

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The get.metacommunity command...  To run this tutorial please download: [[Media:test.0.03.subsample.shared.zip | test.0.03.subsample.shared.zip]].
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#REDIRECT [[get.communitytype]]
 
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==Defaults==
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The shared file is required.
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mothur > get.metacommunity(shared=test.0.03.subsample.shared)
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==Options==
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===minpartitions===
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The minpartitions parameter is used to .... Default=5.
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===maxpartitions===
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The maxpartitions parameter is used to .... Default=10.
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===optimizegap===
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The optimizegap parameter is used to .... Default=3.
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===groups===
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The groups parameter allows you to specify which of the groups in your shared file you would like analyzed.  Group names are separated by dashes.
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mothur > get.metacommunity(shared=test.0.03.subsample.shared, groups=F3D0-F3D1-F3D11-F3D125-F3D13)
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===label===
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The label parameter is used to analyze specific labels in your input. Labels are separated by dashes.
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mothur > get.metacommunity(shared=test.0.03.subsample.shared, label=0.03)
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===processors===
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The processors parameter allows you to run the command with multiple processors. By default processors is 1, and use of multiple processors is not available for windows users.
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==Revisions==
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* 1.31.0 - First Introduced
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[[Category:Commands]]
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Latest revision as of 12:30, 19 May 2015

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