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Difference between revisions of "Phylotype analysis"

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(General commands)
m (Added description for phylo.diversity)
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* [[Classify.seqs]] - Classify sequences according to a taxonomy corresponding to a reference taxonomy
 
* [[Classify.seqs]] - Classify sequences according to a taxonomy corresponding to a reference taxonomy
 
* [[Phylotype]] - assign sequences to OTUs based on their taxonomy
 
* [[Phylotype]] - assign sequences to OTUs based on their taxonomy
* [[phylo.diversity]] -
+
* [[phylo.diversity]] - calculate diversity based on cladistic relationships among a set of taxa
 
* [[classify.otu]] - find a consensus taxonomy for an OTU
 
* [[classify.otu]] - find a consensus taxonomy for an OTU
 
* [[classify.tree]] - find a consensus taxonomy for each node on a tree
 
* [[classify.tree]] - find a consensus taxonomy for each node on a tree

Revision as of 19:17, 16 May 2012

General commands

  • Classify.seqs - Classify sequences according to a taxonomy corresponding to a reference taxonomy
  • Phylotype - assign sequences to OTUs based on their taxonomy
  • phylo.diversity - calculate diversity based on cladistic relationships among a set of taxa
  • classify.otu - find a consensus taxonomy for an OTU
  • classify.tree - find a consensus taxonomy for each node on a tree
  • get.lineage - selects sequences from a given taxonomy
  • remove.lineage - removes sequences from a given taxonomy
  • summary.tax - summarizes taxonomy data