make.count
The make.count command reads a fasta file or series of fasta files and creates a count file.
Default Options
fasta && groups
mothur > make.count(fasta=sample1.fasta-sample2.fasta, groups=A-B)
Assigning sequences from file sample1.fasta to group A: 10 sequences assigned to group A
Assigning sequences from file sample2.fasta to group B: 1 sequences assigned to group B
Group count:
A 10
B 1
Total of all groups is 11
Output File Names: /Users/swestcott/Desktop/release/merge.count_table
This command creates a file called merge.count_table.
Options
output
The output parameter allows you to specify the name of count file created.
mothur > make.count(fasta=sample1.fasta-sample2.fasta, groups=A-B, output=samples.count_table)
format
The format parameter allows you to specify whether the outputted file is a group file or count file. Options group or count. Default=count.
Revisions
- 1.48.0 First Introduced