Analysis examples
Please feel free to add your example data analysis using mothur to the wiki and add the link below.
Illumina 16S rRNA gene sequence analysis
- Miseq SOP - Pat Schloss
Pyrosequencing 16S rRNA gene sequence analysis
- 454 SOP - Pat Schloss
- Costello Stool Analysis - Pat Schloss [Historical reference]
- Sogin Data Analysis - Pat Schloss [Historical reference]
- Pyrosequences from deep anoxic cenotes - Jason Sahl [Historical reference]
- Characterizing community composition along a transect of hypersaline sediments Emily Hollister [Historical reference]
Sanger 16S rRNA gene sequence analysis
- Esophageal community analysis - Contributed by Pat Schloss [Historical reference]
- Marine community analysis - Donovan Parks [Historical reference]
- Agricultural soil community analysis - Martin Hartmann [Historical reference]
- The effects of eutrophication on the structure of bacterial biofilms - David van Horn [Historical reference]
Sanger 16S-ITS rRNA sequence analysis
- Forest soil community analysis - Contributed by Martin Hartmann
Protein-coding gene analysis
- Analysis of the aclB gene in a hot spring: a non-16S rRNA gene example - Justine Hall [Historical reference]
- Pyrosequencing of functional genes - basic data processing, comparing alignment strategies, and integrating mothur output with ARB - Brian Oakley [Historical reference]
- Analysis of coxL richness in relation to total community richness across a succession gradient on Kilauea Volcano - Carolyn Weber [Historical reference]
Viral sequence analysis
- Analyzing H1N1 swine-origin Influenza A isolates - Donovan Parks [Historical reference]