make.fastq
The make.fastq command reads a fasta file and a quality file and creates a fastq file.
Default settings
The make.fastq command parameters are fasta and qfile. Both are required.
mothur > make.fastq(fasta=stool.fasta, qfile=stool.qual)
Options
format
The format parameter is used to indicate whether your sequences are sanger, solexa, illumina1.8+ or illumina, default=sanger.
Revisions
- 1.29.0 Added format parameter.
- 1.30.0 Added illumina1.8+ format.