MIMarks Data Packages

The MIMarks Packages - Here’s a link to NCBI’s definitions, Biosample attributes

Package Options

mothur allows for several survey related environmental package choices. They include: air, host_associated, human_associated, human_gut, human_oral, human_skin, human_vaginal, microbial, miscellaneous, plant_associated, sediment, soil, wastewater or water. Default=miscellaneous. Unknown or inapplicable fields can be filled in with ‘missing’.

air

For more information about the air environment, click here.

The fields that are required for the air package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon *altitude.

host_associated

For more information about the host-associated environment click here.

The fields that are required for the host_associated package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon *host.

human_associated

For more information about the human-associated environment click here.

The fields that are required for the human_associated package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon *host.

human_gut

For more information about the human_gut environment click here.

The fields that are required for the human_gut package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon *host.

human_oral

For more information about the human_oral environment click here.

The fields that are required for the human_oral package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon *host.

human_skin

For more information about the human_skin environment click here.

The fields that are required for the human_skin package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon *host.

human_vaginal

For more information about human_vaginal environment click here.

The fields that are required for the human_vaginal package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon *host.

microbial

For more information about the microbial environment click here.

The fields that are required for the microbial package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lonepth *elev.

miscellaneous

For more information about the miscellaneous environment click here.

The fields that are required for the miscellaneous package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon

plant_associated

For more information about the plant-associated environment click here.

The fields that are required for the plant_associated package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon *host.

sediment

For more information about the sediment environment click here.

The fields that are required for the sediment package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon *depth *elev.

soil

For more information about the soil environment click here.

The fields that are required for the soil package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lonepth *elev.

wastewater

For more information about the wastewater environment click here.

The fields that are required for the wastewater package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon

water

For more information about the water environment click here.

The fields that are required for the water package are: *sample_name *description *sample_title *seq_methods *organism *collection_date *env_biome *env_feature *env_material *geo_loc_name *lat_lon *depth.