Create a strollur object from the exported table of a strollur object object.

The import_dataset function will create a strollur object from the exported table of a strollur object object.

Usage

import_dataset(table)

Arguments

table

a table containing the data from a strollur object. You can create the table using strollur::export_dataset(data).

Value

a strollur object

See also

export_dataset()

Examples

miseq <- strollur::miseq_sop_example()
#> Added 2425 sequences.
#> Assigned 2425 sequence abundances.
#> Assigned 2425 sequence taxonomies.
#> Assigned 531 otu bins.
#> Assigned 2425 asv bins.
#> Assigned 63 phylotype bins.
#> Assigned 19 samples to treatments.
#> Assigned 171 samples distances.
#> Assigned 531 otu bin taxonomies.
#> Assigned 531 otu bin representative sequences.
#> Added a metadata report.
#> Added 2 resource references.
#> Added a contigs_report report.
data <- strollur::import_dataset(strollur::export_dataset(miseq))
#> Added 2425 sequences.
#> Assigned 2425 sequence taxonomies.
#> Assigned 2425 sequence abundances.
#> Assigned 531 otu bins.
#> Assigned 531 otu bin representative sequences.
#> Assigned 531 otu bin taxonomies.
#> Assigned 2425 asv bins.
#> Assigned 2425 asv bin taxonomies.
#> Assigned 63 phylotype bins.
#> Assigned 63 phylotype bin taxonomies.
#> Assigned 171 samples distances.
#> Added 2 resource references.
#> Added a contigs_report report.
#> Added a metadata report.
data
#> miseq_sop:
#> 
#>             starts ends nbases ambigs polymers numns   numseqs
#> Minimum:         1  375    249      0        3     0      1.00
#> 2.5%-tile:       1  375    252      0        4     0   2850.05
#> 25%-tile:        1  375    252      0        4     0  28491.50
#> Median:          1  375    253      0        4     0  56982.00
#> 75%-tile:        1  375    253      0        5     0  85472.50
#> 97.5%-tile:      1  375    254      0        6     0 111113.95
#> Maximum:         1  375    256      0        6     0 113963.00
#> Mean:            1  375    252      0        4     0  56982.00
#> 
#> Number of unique seqs: 2425 
#> Total number of seqs: 113963 
#> 
#> Total number of samples: 19 
#> Total number of treatments: 2 
#> Total number of otus: 531 
#> Total number of otu bin classifications: 531 
#> Total number of asvs: 2425 
#> Total number of asv bin classifications: 2425 
#> Total number of phylotypes: 63 
#> Total number of phylotype bin classifications: 63 
#> Total number of sequence classifications: 2425 
#> Total number of resource references: 2 
#> Total number of custom reports: 2 
#>