read_mothur_rabund

Read a mothur formatted rabund file

Usage

read_mothur_rabund(rabund)

Arguments

rabund

file name (required)

Value

A data.frame containing the sequence otu assignments

Examples

# You can add your otu assignments to the your data set using the following:

# read rabund file into data.frame
otu_data <- read_mothur_rabund(
  rabund =
    strollur_example("final.opti_mcc.rabund")
)

data <- new_dataset()

# assign abundance only 'otu' bins
assign(data = data, table = otu_data, type = "bins", bin_type = "otu")
#> Assigned 531 otu bins.
#> [1] 531