Read a mothur formatted taxonomy file
Arguments
- taxonomy
file name. a mothur taxonomy file, created by classify.seqs
Examples
# You can add the sequences and their taxonomies to the your data set
# using the following:
# read mothur's taxonomy file into a data.frame
classification_data <- read_mothur_taxonomy(strollur_example(
"final.taxonomy.gz"
))
# create a new empty `strollur` object
data <- new_dataset()
# assign sequence classifications
assign(data = data, table = classification_data, type = "sequence_taxonomy")
#> Assigned 2425 sequence taxonomies.
#> [1] 2425