sort_dataframe

Sort dataframe

Usage

sort_dataframe(data, order, named_col)

Arguments

data

the data.frame to be sorted

order

vector containing the order desired

named_col

name of column in data.frame to match order

Value

sorted data.frame

Examples

# sort results alphabetically

miseq <- strollur::miseq_sop_example()
#> Added 2425 sequences.
#> Assigned 2425 sequence abundances.
#> Assigned 2425 sequence taxonomies.
#> Assigned 531 otu bins.
#> Assigned 2425 asv bins.
#> Assigned 63 phylotype bins.
#> Assigned 19 samples to treatments.
#> Assigned 171 samples distances.
#> Assigned 531 otu bin taxonomies.
#> Assigned 531 otu bin representative sequences.
#> Added a metadata report.
#> Added 2 resource references.
#> Added a contigs_report report.

sequence_names <- strollur::names(miseq)

fasta <- strollur::report(miseq, type = fasta)

sorted_fasta <- strollur::sort_dataframe(fasta,
  order = sort(sequence_names),
  named_col = "sequence_name"
)