Write mothur formatted list files

Usage

write_mothur_list(data, file_root = NULL)

Arguments

data: a strollur object
file_root: a string containing the root name of the output file. Default = 'dataset_name'. Resulting in output files {dataset_name}.{bin_type}.list.

Value

vector containing the names of the files created

Examples


miseq <- strollur::miseq_sop_example()
#> Added 2425 sequences.
#> Assigned 2425 sequence abundances.
#> Assigned 2425 sequence taxonomies.
#> Assigned 531 otu bins.
#> Assigned 2425 asv bins.
#> Assigned 63 phylotype bins.
#> Assigned 19 samples to treatments.
#> Assigned 171 samples distances.
#> Assigned 531 otu bin taxonomies.
#> Assigned 531 otu bin representative sequences.
#> Added a metadata report.
#> Added 2 resource references.
#> Added a contigs_report report.
strollur::write_mothur_list(miseq, tempfile())
#> [1] "/tmp/RtmpwFFDh8/file1e1353fb10a9.otu.list"      
#> [2] "/tmp/RtmpwFFDh8/file1e1353fb10a9.asv.list"      
#> [3] "/tmp/RtmpwFFDh8/file1e1353fb10a9.phylotype.list"