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write_taxonomy

Source: R/write_taxonomy.R
write_taxonomy.Rd

Write a 2 column taxonomy file

Usage

write_taxonomy(data, filename = NULL)

Arguments

data

A `strollur` object

filename

a string containing the name of the output file. Default = 'dataset_name'.taxonomy

Value

name of taxonomy file

Examples


miseq <- miseq_sop_example()
#> Added 2425 sequences.
#> Assigned 2425 sequence abundances.
#> Assigned 2425 sequence taxonomies.
#> Assigned 531 otu bins.
#> Assigned 2425 asv bins.
#> Assigned 63 phylotype bins.
#> Assigned 19 samples to treatments.
#> Assigned 531 otu bin taxonomies.
#> Assigned 531 otu bin representative sequences.
#> Added metadata.
#> Added 2 resource references.
#> Added a contigs_report.
write_taxonomy(miseq, tempfile())
#> [1] "/tmp/Rtmp1sax1K/file1bf998a1ef"