Assign samples to treatments in a strollur object
Usage
xdev_assign_treatments(
data,
table,
sample = "sample",
treatment = "treatment",
verbose = TRUE
)Arguments
- data,
a strollur object
- table,
a data.frame containing sample treatment assignments
- sample,
a string containing the name of the column in 'table' that contains the samples. Default column name is 'sample'.
- treatment,
a string containing the name of the column in 'table' that contains the treatments. Default column name is 'treatment'.
- verbose,
a boolean indicating whether or not you want progress messages. Default = TRUE.
Value
an updated strollur object
Examples
data <- new_dataset("my_dataset")
sequence_abundance <- readRDS(strollur_example("miseq_abundance_by_sample.rds"))
xdev_assign_sequence_abundance(data, sequence_abundance)
#> Assigned 2425 sequence abundances.
#> my_dataset:
#>
#>
#> Number of unique seqs: 2425
#> Total number of seqs: 113963
#>
#> Total number of samples: 19
#> Total number of treatments: 2
#>
sample_assignments <- readRDS(strollur_example("miseq_sample_design.rds"))
xdev_assign_treatments(data, sample_assignments)
#> Assigned 19 samples to treatments.
#> my_dataset:
#>
#>
#> Number of unique seqs: 2425
#> Total number of seqs: 113963
#>
#> Total number of samples: 19
#> Total number of treatments: 2
#>