Assign samples to treatments in a strollur object

Usage

xdev_assign_treatments(
  data,
  table,
  sample = "sample",
  treatment = "treatment",
  verbose = TRUE
)

Arguments

data: a strollur object
table: a data.frame containing sample treatment assignments
sample: a string containing the name of the column in 'table' that contains the samples. Default column name is 'sample'.
treatment: a string containing the name of the column in 'table' that contains the treatments. Default column name is 'treatment'.
verbose: a boolean indicating whether or not you want progress messages. Default = TRUE.

Value

an updated strollur object

Examples


data <- strollur::new_dataset("my_dataset")
abundance <- readRDS(strollur_example("miseq_abundance_by_sample.rds"))

strollur::xdev_assign_sequence_abundance(data,
                                           table = abundance)
#> Assigned 2425 sequence abundances.
#> my_dataset:
#> 
#> 
#> Number of unique seqs: 2425 
#> Total number of seqs: 113963 
#> 
#> Total number of samples: 19 
#> Total number of treatments: 2 
#> 

sample_assignments <- readRDS(strollur_example("miseq_sample_design.rds"))

strollur::xdev_assign_treatments(data,
                                   table = sample_assignments)
#> Assigned 19 samples to treatments.
#> my_dataset:
#> 
#> 
#> Number of unique seqs: 2425 
#> Total number of seqs: 113963 
#> 
#> Total number of samples: 19 
#> Total number of treatments: 2 
#>