xdev_assign_treatments — xdev_assign_treatments • strollur

Assign samples to treatments in a strollur object

Usage

xdev_assign_treatments(
  data,
  table,
  sample = "samples",
  treatment = "treatments",
  verbose = TRUE
)

Arguments

data,: a strollur object
table,: a data.frame containing sample treatment assignments
sample,: a string containing the name of the column in 'table' that contains the samples. Default column name is 'samples'.
treatment,: a string containing the name of the column in 'table' that contains the treatments. Default column name is 'treatments'.
verbose,: a boolean indicating whether or not you want progress messages. Default = TRUE.

Value

double containing the number of samples assigned to treatments

Examples


data <- new_dataset("my_dataset")
sequence_abundance <- readRDS(strollur_example("miseq_abundance_by_sample.rds"))

xdev_assign_sequence_abundance(data, sequence_abundance)
#> Assigned 2425 sequence abundances.
#> [1] 2425

sample_assignments <- readRDS(strollur_example("miseq_sample_design.rds"))

xdev_assign_treatments(data, sample_assignments)
#> Assigned 19 samples to treatments.
#> [1] 19