Get the sequence abundance data in a strollur object parsed by sample
Usage
xdev_get_abundances_by_sample(data, samples = as.character(c()))Arguments
- data,
a strollur object
- samples
a vector of strings containing the names of the samples you would like sequence names for. By default all samples are included.
Examples
data <- miseq_sop_example()
#> Added 2425 sequences.
#> Assigned 2425 sequence abundances.
#> Assigned 2425 sequence taxonomies.
#> Assigned 531 otu bins.
#> Assigned 2425 asv bins.
#> Assigned 63 phylotype bins.
#> Assigned 19 samples to treatments.
#> Assigned 531 otu bin taxonomies.
#> Assigned 531 otu bin representative sequences.
#> Added metadata.
#> Added 2 resource references.
#> Added a contigs_report.
# To get the sequence names parsed by sample
abunds <- xdev_get_abundances_by_sample(data)