Get the sequence abundance data in a strollur object parsed by sample

Usage

xdev_get_abundances_by_sample(data, samples = as.character(c()))

Arguments

data: a strollur object
samples: a vector of strings containing the names of the samples you would like sequence names for. By default all samples are included.

Value

2D vector of float containing data requested parsed by sample.

Examples


data <- strollur::miseq_sop_example()
#> Added 2425 sequences.
#> Assigned 2425 sequence abundances.
#> Assigned 2425 sequence taxonomies.
#> Assigned 531 otu bins.
#> Assigned 2425 asv bins.
#> Assigned 63 phylotype bins.
#> Assigned 19 samples to treatments.
#> Assigned 171 samples distances.
#> Assigned 531 otu bin taxonomies.
#> Assigned 531 otu bin representative sequences.
#> Added a metadata report.
#> Added 2 resource references.
#> Added a contigs_report report.

# To get the sequence names parsed by sample
abunds <- strollur::xdev_get_abundances_by_sample(data)