Get the alignment length of sequences in your strollur object

Usage

xdev_get_alignment_length(data)

Arguments

data: a strollur object

Value

Integer containing the length of the alignment or -1 if unaligned.

Examples


 data <- strollur::miseq_sop_example()
#> Added 2425 sequences.
#> Assigned 2425 sequence abundances.
#> Assigned 2425 sequence taxonomies.
#> Assigned 531 otu bins.
#> Assigned 2425 asv bins.
#> Assigned 63 phylotype bins.
#> Assigned 19 samples to treatments.
#> Assigned 171 samples distances.
#> Assigned 531 otu bin taxonomies.
#> Assigned 531 otu bin representative sequences.
#> Added a metadata report.
#> Added 2 resource references.
#> Added a contigs_report report.
 strollur::xdev_get_alignment_length(data)
#> [1] 375