Get the sequence abundance data in a strollur object parsed by sample

Usage

xdev_get_bin_abundances_by_sample(data, bin_type = "otu")

Arguments

data: a strollur object
bin_type: a string indicating the type of bin clusters. Default = "otu"

Value

2D vector of float containing data requested parsed by sample.

Examples


data <- strollur::miseq_sop_example()
#> Added 2425 sequences.
#> Assigned 2425 sequence abundances.
#> Assigned 2425 sequence taxonomies.
#> Assigned 531 otu bins.
#> Assigned 2425 asv bins.
#> Assigned 63 phylotype bins.
#> Assigned 19 samples to treatments.
#> Assigned 171 samples distances.
#> Assigned 531 otu bin taxonomies.
#> Assigned 531 otu bin representative sequences.
#> Added a metadata report.
#> Added 2 resource references.
#> Added a contigs_report report.

# To get the `otu` bin abundances parsed by sample
otu_abunds <- strollur::xdev_get_bin_abundances_by_sample(data)