xdev_remove_bins — xdev_remove

Designed with package integration in mind, the remove bins function allows you to remove bins from a strollur object

Usage

xdev_remove_bins(data, bin_names, trash_tags, bin_type = "otu")

Arguments

data,: a strollur object.
bin_names,: a vector of strings containing the names of the bins you would like removed.
trash_tags,: a vector of strings containing the reasons you are removing each bin
bin_type: a string indicating the type of clusters.

Value

No return value, called for side effects.

Examples


  data <- new_dataset(dataset_name = "my_dataset")

  bin_names <- c("bin1", "bin2", "bin3")
  abundances <- c(110, 525, 80)

  xdev_assign_bins(data = data, table = data.frame(bin_names = bin_names,
                               abundances = abundances), bin_type = "otu")
#> Assigned 3 otu bins.
#> [1] 3

  count(data = data, type = "bins", bin_type = "otu")
#> [1] 3

  bins_to_remove <- c("bin1")
  trash_tag <- c("bad_bin")

  xdev_remove_bins(data = data,
                   bin_names = bins_to_remove,
                   trash_tags = trash_tag)

  count(data = data, type = "bins", bin_type = "otu")
#> [1] 2