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xdev_remove_samples

Source: R/RcppExports.R
xdev_remove_samples.Rd

Designed with package integration in mind, the remove samples function allows you to remove samples from a strollur object

Usage

xdev_remove_samples(data, samples, reason = "remove_samples")

Arguments

data,

a strollur object.

samples,

vector of strings containing the names of the samples to remove.

reason,

string containing the reason for removal. Default = "remove_samples".

Value

No return value, called for side effects.

Examples


data <- miseq_sop_example()
#> Added 2425 sequences.
#> Assigned 2425 sequence abundances.
#> Assigned 2425 sequence taxonomies.
#> Assigned 531 otu bins.
#> Assigned 2425 asv bins.
#> Assigned 63 phylotype bins.
#> Assigned 19 samples to treatments.
#> Assigned 531 otu bin taxonomies.
#> Assigned 531 otu bin representative sequences.
#> Added metadata.
#> Added 2 resource references.
#> Added a contigs_report.

count(data = data, type = "samples")
#> [1] 19

# To remove samples 'F3D0' and 'F3D1'

xdev_remove_samples(data, c("F3D0", "F3D1"))

count(data = data, type = "samples")
#> [1] 17