Designed with package integration in mind, the set sequences function allows you to change the nucleotide strings of sequences in a strollur object. For example, set_sequences may be used after alignment to overwrite the unaligned sequences with aligned sequences.
Usage
xdev_set_sequences(
data,
sequence_names,
sequences,
comments = as.character(c())
)Arguments
- data,
a strollur object
- sequence_names,
a vector of strings containing sequence names
- sequences,
a vector of strings containing sequence nucleotide strings
- comments,
a vector of strings containing sequence comments. (Optional)
Examples
data <- new_dataset(dataset_name = "my_dataset")
xdev_add_sequences(data = data,
table = data.frame(sequence_names = c("seq1", "seq2",
"seq3", "seq4")))
#> Added 4 sequences.
#> [1] 4
xdev_set_sequences(data = data,
sequence_names = c("seq1", "seq2","seq3", "seq4"),
sequences = c("ATTGC", "ACTGC", "AGTGC", "TTTGC"))