Phylotype analysis

General commands

• classify.seqs - Classify sequences according to a taxonomy corresponding to a reference taxonomy
• phylotype - assign sequences to OTUs based on their taxonomy
• phylo.diversity - calculate diversity based on cladistic relationships among a set of taxa
• classify.otu - find a consensus taxonomy for an OTU
• classify.tree - find a consensus taxonomy for each node on a tree
• get.lineage - selects sequences from a given taxonomy
• remove.lineage - removes sequences from a given taxonomy
• summary.tax - summarizes taxonomy data
• merge.taxsummary - combines tax summary files.