The rdataset package stores the data associated with your microbial DNA analysis. This includes nucleotide sequences, abundance, sample and treatment assignments, taxonomic classifications, asv, otu and phylotype clusters, metadata, trees and various reports. It is designed to facilitate data analysis across multiple R packages with utility functions to read from mothur, qiime2, dada2 and phyloseq.
Installing rdataset
You can install the CRAN version with:
install.packages("rdataset")You can install the development version of rdataset from GitHub with:
# install.packages("devtools")
devtools::install_github("SchlossLab/rdataset")Importing Data
vignette("General_Importing")vignette("Importing_from_mothur")vignette("Importing_from_qiime")