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save_dataset

Source: R/save_dataset.R
save_dataset.Rd

The save_dataset function will save the strollur object to file.

Usage

save_dataset(data, file)

Arguments

data

a strollur object

file

a string containing the file name.

Value

A file containing the `strollur` object

See also

[load_dataset()]

Examples


data <- read_mothur(
  fasta = strollur_example("final.fasta.gz"),
  count = strollur_example("final.count_table.gz"),
  taxonomy = strollur_example("final.taxonomy.gz"),
  design = strollur_example("mouse.time.design"),
  otu_list = strollur_example("final.opti_mcc.list.gz"),
  dataset_name = "miseq_sop"
)
#> Added 2425 sequences.
#> Assigned 2425 sequence abundances.
#> Assigned 2425 sequence taxonomies.
#> Assigned 531 otu bins.
#> Assigned 19 samples to treatments.

save_dataset(data, "miseq_sop.rds")
#> [1] "miseq_sop.rds"