Tags Index

calculators

ace Anderberg Bergerparker Boneh Bootstrap Braycurtis Bstick Canberra Chao Coverage Efron Geometric Gower Hamming heip Hellinger Invsimpson Jabund Jack Jclass Jensen-Shannon Divergence Jest Kulczynski Kulczynskicody Lennon Logseries Manhattan Memchi2 Memchord Memeuclidean Mempearson Morisitahorn Npshannon Nseqs Ochiai Odum Qstat Shannon shannoneven shannonrange Sharedace Sharedchao Sharednseqs Sharedsobs Shen Simpson simpsoneven smithwilson Sobs Soergel Solow Sorabund Sorclass Sorest Spearman Speciesprofile Square Root Jensen-Shannon Divergence Structchi2 Structchord Structeuclidean Structkulczynski Structpearson Thetan Thetayc Whittaker

commands

align.check align.seqs amova anosim bin.seqs chimera.bellerophon chimera.ccode chimera.check chimera.perseus chimera.pintail chimera.slayer chimera.uchime chimera.vsearch chop.seqs citation classify.otu classify.seqs classify.tree clearcut cluster.classic cluster.fit cluster.fragments cluster cluster.split collect.shared collect.single consensus.seqs cooccurrence corr.axes count.groups count.seqs create.database degap.seqs deunique.seqs deunique.tree dist.seqs dist.shared estimator.single fastq.info filter.seqs get.communitytype get.coremicrobiome get.current get.dists get.group get.groups get.label get.lineage get.mimarkspackage get.otulist get.oturep get.otus get.rabund get.relabund get.sabund get.seqs get.sharedseqs heatmap.bin heatmap.sim help homova indicator kruskal.wallis lefse libshuff list.otulabels list.seqs make.biom make.clr make.contigs make.fastq make.file make.group make.lefse make.lookup make.shared make.sra mantel merge.count merge.files merge.groups merge.otus merge.sfffiles merge.taxsummary metastats mgcluster nmds normalize.shared otu.association otu.hierarchy pairwise.seqs parse.list parsimony pca pcoa pcr.seqs phylo.diversity phylotype pre.cluster primer.design quit rarefaction.shared rarefaction.single remove.dists remove.groups remove.lineage remove.otus remove.rare remove.seqs rename.file rename.seqs reverse.seqs screen.seqs sens.spec seq.error set.current set.dir set.logfile set.seed sff.multiple sffinfo shhh.flows shhh.seqs sort.seqs sparcc split.abund split.groups sra.info sub.sample summary.qual summary.seqs summary.shared summary.single summary.tax system tree.shared trim.flows trim.seqs unifrac.unweighted unifrac.weighted unique.seqs venn

file_types

align.report file clr file column-formatted distance matrix constaxonomy file count file design file fasta file file file group file list file name file oligos file phylip-formatted distance matrix rabund file relabund file sabund file shared file taxonomy file